In no particular order:
Just Older
Undivided
Any Other Day
Say It Isn't So
Brokenpromiseland
Mystery Train
The Distance
Two Story Town
Last Man Standing
(You Want to) Make A Memory
Novocaine

I would also list these unreleased songs:
Lonely (In fact this just might be my fave post-2000 song)
Walk Like A Man
Postcards From the Wasteland
Nothing
These Open Arms